capture_linux folder from Ye-Sheng's Libero proj

created capture_linux folder from Ye-Sheng's Libero proj.  this is the
project exactly as it came out of the zip archive
capture_linux converted to Libero 10.1 format

capture_linux libero project was converted to the libero 10.1 format by
Libero
added 2 smartfusion docs: libero UG and APB3 AN

added 2 smartfusion docs to hwref.  one is the libero user guide (for
10.1) and the other is an app note about building an APB3 core for
the smartfusion.
added the uSDR schematic to hwref
stonyman.v now runs the init sequence

stonyman.v now works to initialize the camera
got capture_linux project working with libero 10

got capture_linux project working with libero 10.  I had to install
Libero 9 take a screenshot of the I/O assignments and manually copy
those settings over to the Libero 10 project.
renamed capture_linux project to meyesight

renamed capture_linux project to meyesight, which is to be the new name
of the project (MEyeSight is replacing InSight as the project's name).
renamed capture_linux project to meyesight pt2

renamed capture_linux project to meyesight pt2.  this commit exists
because it is apparently a best practice in git not to modify files that
you are renaming in the commit.
fixed TOPLEVEL smartdesign quirk in meyesight proj

fixed TOPLEVEL smartdesign quirk in meyesight proj where the AHB bus was
way far away from everything else for who knows what reason.
reorganized hw dir to match the sw dir (and rest)

reorganized the hw directory to match the format of the other
directories in this repo, specifically the sw directory.
changed permissions, most of the repo was modified

changed file permissions and now most of the repo thinks it was changed.
so, I'm checking it in!  marking ALL files as not executable.  Some
files like ardueyectrl.py or seriallistener.py should actually be
executable.  remark them as such when the time comes that you need to do
so.
added the rest of the stonyman.v code

added the stonyman.v code for operating the camera.  however, it won't
exit the S_IDLE state after initialization (hardcoded), because that
code's not tested yet.
changed INPHI to use Fabric_IO 5 instead of 4

changed INPHI to use Fabric_IO 5 instead of 4, because that pin is in
use in the linux project, so I'm just changing capture to match.
incorporated stonyman driver into meyesight proj

incorporated stonyman driver into meyesight proj, which is the
linux-based project for capturing.
made clkgenerate.v not executable

made clkgenerate.v not executable (all these permissions problems are
caused by windows or libero or both)
renamed AdcCap.v to adc081s101.v in both projs

renamed AdcCap.v to adc081s101.v in both projs, capture and meyesight
renamed AdcCap.v to adc081s101.v in both projs pt2

now I've modified the appropriate files for the name change.
fixed bug in stonyman.v driver with delay lengs

fixed bug in stonyman.v driver with delay lengs, which were 1 tick too
long in some states.
attempted to fix stonyman timing bug

attempted to fix stonyman timing bug where the delay after lowering the
stonyman pin is 350 instead of 300ns as expected.  it didn't actually
seem to work.  I'm checking it in anyway.
attached GPIO 0 and 1 to LEDs 0 and 1

attached GPIO 0 and 1 to LEDs 0 and 1 to later be controlled by software
running on the uSDR (under linux).  currently, they are not used.