[FIX] fixed incorrect hiding of -tc option

git-svn-id: http://svn.seqan.de/seqan/trunk@14537 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] fixed bug in local to global rID conversion

git-svn-id: http://svn.seqan.de/seqan/trunk@14538 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] added a non-trivial bam example


git-svn-id: http://svn.seqan.de/seqan/trunk@14539 e6417c60-b987-48fd-844e-b20f0fcc1017