That was the modification I made to the code. It ignores contested.

> On Dec 30, 2013, at 10:55 AM, Daniel McDonald <notifications@github.com> wrote:
> 
> In tests/test_taxtree.py:
> 
> >      def test_sample_rare_unique(self):
> >          t = update_tree(None, tax_strings_by_sample)
> >          tax_by_sample = {'a':tax_strings_by_sample[0],
> >                           'b':tax_strings_by_sample[1],
> >                           'c':tax_strings_by_sample[2]}
> >          exp = [('a', None, [['k__1','p__x','c__'],['k__1','p__y','c__3']], 
> > -                           [['k__1','p__x','c__1'],['k__1','p__x','c__2']]),
> > +                           [['k__1','p__x','c__1'],['k__1','p__x','c__2'],
> > +                            ['k__1','p__[y]', 'c__[1]']]),
> isn't this not expected? The code is ignoring taxa that have a '[' in the tax string, or am I missing something?
> 
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