Updated to support multiple commands per tool and added config files for tools
Add option to run all validators automatically
Added test of isolate asm
Merge branch 'master' of github.com:treangen/metAMOS

Conflicts:
	src/generic.py
	src/runPipeline.py
Removed enabled.ini from workflows which is writted by INSTALL
Adding more assemblers
Add new testcase for workflows
Update java code
Added split fasta code
Merge branch 'master' of github.com:treangen/metAMOS
added sga,abyss
Merge branch 'master' of github.com:treangen/metAMOS
Add more tools to the known paths
Merge branch 'master' of github.com:treangen/metAMOS
Merge branch 'master' of github.com:treangen/metAMOS
Added some more programs
Update workflows to download files
Update generic to have more keywords to support a wider range of programs
Update web report tables to look nicer, including additions to stylesheet.
Update init/run to use workflow information
Added prokka support
bugfixes to scaffold and propagate steps