Changing logging messages a bit
Added more logging info
only set the target memory in PreprocessChunks which calls the preprocessor commandline and should optionalyl be on swarm
Updated to work with fixed matching and ordering lib
Merge branch 'development' of https://github.com/benedictpaten/cactus into development
Adding/improving logging
-
Fix to ensure preprocessor gets memory request
clean out sequence compression.  should have been done in last update
reduce killwaitintervals when in memeory mode
add setSubtreeSize method to config wrapper for progressiveCactus interface
fix bug in subtree decomposition when subtree size is large (hopefully)
remove assert that prevented trees with degree > subtree size from being processed
make progressive tree input more robust to missing data and errors
jack max ktservers way up. maybe need better jobtree-aware way of controlling this in future
fix printing of database exception when determining unique ids
Modified reference code to work with new reference algorithm - tests
all pass
Merge branch 'development' of https://github.com/benedictpaten/cactus
into development

Conflicts:
	api/impl/cactusDisk.c
fix bug in multiCactusTreeTest.py which was checking for wrong solutions for degrees larger than 2.
Disabling a few tests that were pointless