Add Total Count normalization
graphic changes to improve the look when plotting multiple plots on a single sheet.
graph tumor specific, epithelial, and fibroblast genes from all prostate samples
ignore intermediate and final build results.
ignore a whole bunch of intermediate results

ignore things like .txt files in the g19 and mm9 genome directories.
Also ignore .ebwt files and all .pdf files
Add CLL scatter plots

Old scatter..R file goes away and is replaced by more particular
scatter plot files with more specific annotations.
ignore .ds_store files
save rna depletion files
Add nuc2aa routine

Convert DNA codes to amino acids.
Old R code

Mostly old R code that is not used, but which was inspirection for
later code.
Archiving old rrna project