Changed tables to JXTable to implement sorting. Spreadsheet functionality added. Loading of sbml and csv speeded - ~4x faster.
Cleaned up etc folder
cleaned up etc folder2
Fixed Ec_core_flux1_no_boundaries to correctly deal with boundary metabolites and exchange reactions.
Basic Machine Dependent Changes
SBMLWriter

Notes:
There are several likely issues with the XML writing. This is mostly
pseudocode to get an idea of how an XML writer will work for MOST. Just
need to gain a better familiarity with the javax.xml library and will be
able to correct the issues then.

Additionally, there are a lot of redundancies which can be handled by
creating various super-classes. To be taken care of around testing to
allow for changes to be more easily made.

More information about XML reading and writing can be found at:
http://www.vogella.com/articles/JavaXML/article.html

More information about attribute adding can be found at:

http://www.java2s.com/Code/Java/JDK-6/UsingXMLEventFactorytocreatexmldocument.htm
Added ListOfSpecies Write method
Corrected minor issue

missing bracket
More changes

Misplaced bracket, adding ListOfReactions class
ListOfReactions
ListOfReactions and KineticLaw

More changes to listofreactions and made proper change given paramaters
being a sub-node of Kinetic Law node.
addReaction remake

erased non-essential code and further elaborated on method
specifications
Fixed misplaced bracket

missing bracket
needed a throw statement
ReactionFactory Incorporation
Further incorporation of RFactory & SBMLReaction
Testing...
Minor Fix

method not needed
Further incorporation and MetaboliteFactory
Conversion of double to string

Needs checking if value is equivalent