Removed outdated manual gates that were lacking cytokine counts for the majority of PTIDs.
Added manual-gate information for IL2+|IFNg+ gates from HVTN065. Added an accompanying munge script to preprocess the data for classification.
Cleaned up manual gate summary. Also, added preliminary MIMOSA code to classification summary script.
Updated Shiny app to include upstream gates.
Removed unreliable samples from GatingSet in munge script.