recover around Input.Stop() calls.
Big doc update, include new man pages, switch around rat includes.
Fixup message matching section.
Support using the type as the section name.
Few remaining old references to pluginGlobals.Typ that needed to be pluginType.
Add decoder defaults so they don't need to be included as config boilerplate.
Update documentation to reflect decoder defaults.
Merge branch 'dev' into features/queue-report

Conflicts:
	pipeline/config_test.go
Tweak new decoder-related tests to reflect new decoder infrastructure.