Removed copy dedup metrics from copytoresultdir protocol in haloplex pipeline.
Updated fastqc protocol in haloplex pipeline.
Merge pull request #65 from DashaZhernakova/master

Bug fixes in SNVMix to gen converter
runtime genotype calling
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Included requests/changes after consulting customers
Merge pull request #62 from freerkvandijk/master

Updates on Haloplex pipeline
RNA-seq genotype calling qc
RNA-seq updates
commented foreach in a compute5 protocol
Merge pull request #66 from kantale/master

corrected a foreach remnant in a compute 5 protocol
update parameters RNA-seq
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Bug fix phasing
Shapeit
converted 2 to 2G
converted 2 to 2G
converted 2 to 2G
converted 2 to 2G