Commit of most recent version of GEOCARBON-J

Code underwent massive restructuring since previous commit.  Other
changes since previous commit:
1.  Testing of several new variables has been added (both singleton
values and time-series') added
2.  Support for test run output to local mysql database has been added
3.  Scripting for post-run data analysis (e.g. mean, median,
percentiles, stdev, etc) has been removed from the java and been
rewritten as sql scripts