Annotation: fix typo on test
Add dna_to_aa_aln method and tests
Merge branch 'master' of github.com:bioperl/bioperl-live
maint: remove hard tabs and trailing whitespace
Bug 3415
make explicit
update tests for perl 5.18
Tests for Bio::Taxonomy::get_tree

Fix conflicts:

	t/RemoteDB/Taxonomy.t
Fixed POD indentation
Use list context instead of scalar context to include all taxa
Avoid use of an undefined value as an ARRAY reference

Fix conflicts:

	Bio/DB/Taxonomy/list.pm
Test uses species, not intermediary node
Use a default format for as_string
Adding arbitrary branch length in Bio::DB::Taxonomy::get_tree
Small POD and and error message change
Fixed redefined variable
Fixed use of uninitialized value $reporttype
Fixed number of tests in t/ClusterIO/SequenceFamily.t
Boolean return status for merge_lineage()

Fix conflicts:

	t/RemoteDB/Taxonomy.t
More Bio::DB::Taxonomy::list tests