Updated the calculation of partner turnover
Changed introduction event back to original
Transmission updated for new condom campaigns

relationID migrated to the top of the file. Condoms updated to be
relative to relationships (as well as individuals). Fixed ARV
probability change so as to not undo condom changes.
Added the two new condom events
Fixed minor bug in simtimeTOdate
Brought back male circumcision campaign
made improvements to cumulative incidence

and add prevalence which doesn't count deceased individuals.
Updated documentation to most recent