updated BioProject ID
now removes leading and trailing NNs (=CLC artifacts) before writing AGP coordinates for interior gaps (=paired-end linkage)
updated locus tag prefix, BioProject ID and organism spelling
now operates on the cleaned files created in response to the first iteration of NCBI review
now also captures gene names that include parentheses preceding those of the species name that has the homologue
throwaway (?) script to filter/pad contaminants and duplications
script to grep discrep.txt for FATAL categories in tbl2asn output
updated skip patterns