Fix context for Tomcat external tests
Add a few more mocked test plus an improved sonar config that allows for cross-module integration tests
Simple test for study file creation
(We need to destroy this hotfix branch that was polluted with develop code)
Merge branch 'hotfix/0.13.6.8' into develop
Merge branch 'develop' of https://github.com/SeqWare/seqware into develop
Isolate integration tests in external module from database changes anywhere else.
Add code coverage support to the extended integration tests going through to individual plugins.
Finish work on WorkflowRunReporter test