NEW "calculate" module with functions to calc. coverage metrics
REMOVED deprecated tests for Core
NEW "group"-ing function to cluster intervals based on total length
NEW tests for added functions
NEW quickBuild method to setup new database
NEW process function, processing multiple intervals
REMOVED core module
CHANGED "group" to return input data
NEW chromosome function to build a list of chromosome IDs
CHANGED intervals now return surplus columns
CHANGED fileCheck now optionally checks multiple files
Cleaned up script CLI to adapt to new architecture
All tests are passing
ADDED dialect option to “ElementAdapter” init
ADDED dialect option to CLI
FIXED #35
Minor changes
ADDS relative imports of utils
CHANGES to using process func. in CL
ADDS splice sites support to CL
FIXES bug in new quickBuild method
FIXES syntax error in changed fileCheck function
FIXES a few other bugs in CL
FIXES a few mysql related bugs
ENABLES basic MySQL support (build)
FIXES silly method/function error in “process”
CHANGES “process” function and adds inline docs
CHANGES to add interval ID to in “intervals” function
ADDS “group” handles interval IDs
FIXES “chanjo” CL JSON dump bug
Merge branch 'feature/extract-functionality' into develop

Conflicts:
	scripts/chanjo