Issue #15: Add Solr indexing support for variants
Initialize the column information from existing tables. Hacky, temporary solution.
Issue #42: Add Solr indexing support for non-variant entities
Migrated misc SQL queries to JQPL.
Issue #19: Create an abstraction layer for managing JPQL queries
Added factory for EntityManager.
Issue #42: Add Solr indexing support for non-variant entities
Added the posibilty to persist domain entities which have known, annotated versions.
Issue #15: Add Solr indexing support for variants
Small changes to client code.
[cleanup] Removed commented out code, organized imports.
[misc] Refactored test to use factories for the EntiyManager and QueryManager.
Issue #42: Add Solr indexing support for non-variant entities
Replace queries for the log entities.
Issue #42: Add Solr indexing support for non-variant entities
Replaced most important patient SQL queries with JPQL queries.
Issue #42: Add Solr indexing support for non-variant entities
Small changes to the patient entity.
Issue #42: Add Solr indexing support for non-variant entities
Replaced SQL queries with JQPL queries for Cohorts.
Issue #15: Add Solr indexing support for variants
Small change to the SearcheableVariant class.
[misc] Added missing license to several files.
Issue #42: Add Solr indexing support for non-variant entities
Added annotated entity for gene.
Issue #42: Add Solr indexing support for non-variant entities
Added annotated entity for ontology and terms.
Issue #42: Add Solr indexing support for non-variant entities
Added annotated entities for genomic regions and region sets.
Issue #42: Add Solr indexing support for non-variant entities
Added id generation method.
Issue #42: Add Solr indexing support for non-variant entities
Added annotated solr entities for chromosomes and references.
Issue #42: Add Solr indexing support for non-variant entities
Changes some SQL queries to JPQL in the ProjectManager class.
Issue #42: Add Solr indexing support for non-variant entities
Changes some SQL queries to JPQL in the OntologyManager class.