Make nucleotide tables const
Amend .gitignore to ignore produced binaries
r200: keep read index in bam1_t
plot-vcfcheck: -T option to set PDF title; minor improvements in various plots
htscmd: fall back to default name when named non-standardly
vcfcheck: singletons by sample and multiallelic SNPs stats
plot-vcfcheck: new -s switch; several new graphs and table values
vcf.c: strip newline from the last sample in BCFs
plot-vcfcheck: Added missing legend into SNP/indel counts by AF graphs
plot-vcfcheck: Fix in merging per-sample average depth - average, not sum
Merge remote branch 'remotes/pd3master/master' into develop
htslib/vcf.c: Set length of on-fly added chromosomes to max signed int; Removed deprecated header parsing code.
plot-vcfcheck: zoomed y-range for ts/tv by sample graph
htslib/vcf.c: free unused records, fixed a small memory leak
vcfcheck: New -t option
vcfcheck: --debug outputs to stdout rather than stderr and the output parsable
Merge branch 'master' of github.com:samtools/htslib
merge r199 changes; part 1
merge r199 changes; part 2
merge r199 changes; part 3