LoadPulses now supports loading pulses from ccs.h5 to cmp.h5.
   bug 23822	

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 126845]
   Update samFilter's default parameters and description.
   bug 18909

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 126855]
   Add some experimental options to control h5 data caching. This will make life
   easier for Marcus to evaluate loadPulses' performance.
   bug 18909	

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 127936]
   Fix memory leak when aligning FASTQ reads.
   Bug 24087	

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 128005]
   Delete unused code and do minor changes for unit tests.
   bug 18909	

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 128009]
   Add some unit tests for blasr code base.
   bug 18909	

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 128015]