Integrate linuxbrew into standard CloudBioLinux installation directory to avoid need for additional path manipulation. Work towards making linuxbrew builds first class alongside CloudBioLinux custom builds
Provide installation of specific program versions with homebrew/linuxbrew. Enables python style requirements (like 'samtools==0.1.18') in input YAML files. Wraps brew functionality to allow swapping between versions
Ensure brew specific versions are linked when previously existing binaries are in the way
Update grabix to latest version with large file fixes
Update freebayes to latest point release
Bump biobambam to latest release with fixes for bammarkduplicates
Merge branch 'master' of github.com:chapmanb/cloudbiolinux
Merge branch 'master' of https://github.com/chapmanb/cloudbiolinux into genome_designer