Release log update
Encode release log update
v290 final build
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
New version number v290
Code review feedback from Brian - use trackDb instead of hardcoding accessory URL.
refs #11763
Adding details pages for snp138* tracks.  refs #11438
Row 1 to 36 of edwFile.submitId are all equal to 1. And the userId of edwSubmit row 1 is 0. the edwUserNameFromFileId() will cause the 500 server error when looking for email of the the non-exist user 0. In this case, edwUserNameFromFileId() should return "an unknown user" instead.
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
Correcting pre-emptive news entry, code review #11840
Make annoAssemblySeqSize cache sequence sizes, because twoBitSeqSize
does a seek and read, and some annoStreams check sequence size pretty often.
In annoStreamerSetRegion, if we're given (chrom, 0, 0), treat that as
(chrom, 0, chromSize).
When reading a VCF file without a tabix index, make sure we stop
after regionEnd (if there is one).
Fix for crash found by Jonathan in http://redmine.soe.ucsc.edu/issues/11775#note-60 ;
more careful error-checking and corner-case handling in getTxCoords.
When CDS starts out of frame, we were getting early truncation of
coding sequence, leading to some strange characters in output; the
ideal fix would be to take exonFrames into account, but for now we can
just bail if coding sequence ends before the variant hits it.  Also
fixing a couple bone-headed incorrect invocations of slAddTail, and
making sure that an exon's splice_region_variant is listed with an
exon number, not an intron number.
refs #11775, #11771
Merge remote-tracking branch: upstream/master