UUIDs available for all entities
uuid's for all entities
reading and writing UUIDs for core entities
New proteome API
General purpose association map for adding relationships and associating entities
unmodifiable
accessing associations
new proteome implementation
api changes (removing unused methods)
mockito dependency and reconstruction interface methods for access to associations
removing old proteome access
providing reconstruction (into which the entities are being read) to the entity readers
product associations being written to the new associations maps
changing how reaction associations are done
reactome documentation
implementation documentation
unit tests for the new reactome implementation
implementation in place for gene, gene product associations
gene/gene product associations moved to reconstruction - genes still need registration (via reconstruction.register())
backwards compatible gene/gene product association read and writing without using entity streams on genome or chromosome