delegate instead of duplicate: _calculate_paired_end_kb_usage

code-deduplication: nnutter
delegate instead of duplicate: _calculate_non_paired_end_kb_usage

code-deduplication: nnutter
delegate instead of duplicate: calculate_alignment_estimated_kb_usage

code-deduplication: nnutter
delegate instead of duplicate: dump_illumina_fastq_files

code-deduplication: nnutter
delegate instead of duplicate: dump_solexa_fastq_files

code-deduplication: nnutter
delegate instead of duplicate: dump_sanger_fastq_files (diverged code)

The code appears to have diverged a bit.  First, this was not passing @_
to `$self->dump_fastqs_from_bam`.  Second, it was using
Genome::Model::Tools::Maq::Sol2sanger instead of
Genome::Model::Tools::Fastq::Sol2sanger to convert the file.  However, I
expect that Genome::Model::Tools::Fastq::Sol2sanger is the better
choice so went ahead and delegated this method.

code-deduplication: nnutter
delegate instead of duplicate: desc

code-deduplication: nnutter
delegate instead of duplicate: read1_fastq_name

code-deduplication: nnutter
delegate instead of duplicate: read2_fastq_name

code-deduplication: nnutter
delegate instead of duplicate: fragment_fastq_name

code-deduplication: nnutter
delegate to Genome::Sys instead of using inheritance

This class strangely inherits from Genome::Sys.  This changes some calls to
specifically delegate to Genome::Sys.  I verified that can() returned
the Genome::Sys methods.

code-deduplication: nnutter
whitespace
delegate instead of duplicate: resolve_fastq_filenames

code-deduplication: nnutter
delegate instead of duplicate: dump_illumina_fastq_archive

code-deduplication: nnutter
delegate instead of duplicate: validate_fastq_directory

code-deduplication: nnutter
delegate instead of duplicate: resolve_external_fastq_filenames

code-deduplication: nnutter
delegate instead of duplicate: _calculate_total_read_count

code-deduplication: nnutter
delegate instead of duplicate: run_start_date_formatted

code-deduplication: nnutter
delegate instead of duplicate: total_bases_read

code-deduplication: nnutter
delegate instead of duplicate: run_identifier

code-deduplication: nnutter