Process command line switch to allow mmap input files.  Initial commit of sel_reads command skeleton
Merge branch 'develop' of ssh://fenris.ti00a1.pcb.ub.es:7999/gt/gemtools into develop
Add PRI macros to stop compile warnings on OS X
Factorized juction size when no junction
Enabled annotation parameter
Customized num_mmaps calculation for unpaired paired reads
Merge branch 'develop' of ssh://10.3.11.15:7999/gt/gemtools into develop
Add compressed output support (should be transparent) for gzip and bziop2
Change BZIP references to BZIP2 to be consistent with the bzlib library
Fix bug in gt.filter --max-strata-afet-map
Merge branch 'develop' of ssh://fenris.ti00a1.pcb.ub.es:7999/gt/gemtools into develop
Added counting tool
Added counting tool
Revert "Change BZIP references to BZIP2 to be consistent with the bzlib library"

This reverts commit a18517d4961dc0a52567dd3680ca42e52f3296e6.
Revert "Add compressed output support (should be transparent) for gzip and bziop2"

This reverts commit 973fd36277eaf8da74661b4af1c626606356b50d.
Added non-working threaded gtf reader :)
custom buffer filter
Bug fix for missing function in zlib + fix to make stream compression work
still trying to merge...
Added missing BZip file open error message