removed clashing abbreviation and added a new synonym for extracellular
transferred fingerprint reader and writer from CheMet
Revert "transferred fingerprint reader and writer from CheMet"

This reverts commit 79eb57487c4a21a6d27f4c62b26eee7b9be35ae5.
transferred fingerprint reader and writer from CheMet
updating dependency versions, primarily junit, log4j and guava but biojava, lucene and woodstox were also updated
reverting lucene version due to test failures
Merge branch 'develop' into feature/chemet-db-deps
Adds Brenda parser and PseudoFingerprintChemicalNames