Adds library and script files for make_bipartite_network

This functionality is being built to replace make_otu_network.py because that script has become nearly non-functional given changes to Cytoscape and Qiime including the biom format.
Updated script and added library rewrites as well as tests.
Added test data and outputs.

Verified that it works with %prog command in help documentation.
Addressed comments by @lkursell and @ElDeveloper
Addressed changes suggested by @ElDeveloper and @josenavas
Significant changes to script interface

Changes mades to the script interface so that the --md_fields option would be required. This, coupled with a change to the library, allows an individual to passbiom files which have jagged metadata (if metadata is list or string). Laura pointed out that this was likely the most common use case, and so it needed to be supported.
Added a space in doc string to resolve positional argument failure.
Modified so resolve jenkins failures

added script_usage_output_to_remove directories to the script.
Merge branch 'make_bipartite_network.py' of git://github.com/wdwvt1/qiime