order contigs by length for improve assembly
fix typo
Merge branch 'pipeline' into order_contigs
update memory limit for bsub options
Merge pull request #240 from CraigPorter/lsf_memory

update memory limit for bsub options
Merge pull request #238 from CraigPorter/order_contigs

Order contigs
filter out lanes which have already been mapped
speedup mapping by not generating coverage data thats not used
no need to check if mapping done twice
Merge pull request #241 from andrewjpage/speedup_mapping

Speedup mapping
Deal with single cell reads differently when getting kmer sizes
Merge pull request #242 from martinghunt/single_cell_assembly

Deal with single cell reads differently when getting kmer sizes
Only run --assemble-only when the spades assembly is not single cell
Merge pull request #243 from martinghunt/single_cell_assembly

Only run --assemble-only when the spades assembly is not single cell
Updated pseudo_genome task: requesting 2 procs and spanning 1 host.
Merge pull request #244 from fy2/pipeline

Updated pseudo_genome task: requesting 2 procs and spanning 1 host.
Cleanup more directories from SPAdes assembly
Merge pull request #245 from martinghunt/single_cell_assembly

Cleanup more directories from SPAdes assembly