Started to restructure the directories of the modules to a sensible format
Fixed remaining issues (+16 squashed commits)
Squashed commits:
[52246c4] fixed roles, made reactors catagorized as support rather then utility
[e3b246d] Fixed SignalCatcher
[84a9db5] Fixed NUbugger
[12f7fd6] Fixed the console logger (and fixed it to correctly be sync)
[4ec0f47] Fixed the configuration systems
[ca427d8] fixed platform
[a3379ff] Fixed eSpeak
[c025a37] Fixed ScriptEngine
[919c9c4] Fixed LinuxCamera
[3d81237] Fixed AudioInput
[6bc7cd4] Fixed audiofileinput
[651993a] Fixed up ScriptTuner
[72f4247] Fixed up script runner
[f2d3ed9] Fixed mechwarrior
[d43bf13] Fixed up some headers and comments on dancedarwin and aubio
[2f79dd3] Moved Beat’n beat detector and fixed its namespacing
Restructured the messages and fixed resulting compile errors
TODO in future, make modules use the messages they require
Merge branch 'feature/Restructure' into develop
Enhanced the protocol buffer compiler to be able to handle files not in the root directory
Fixed missing change from hats to roles
Seperated ServoIDs from the darwin classes
Fixed the motion manager and added a placeholder SensorFilter role (needs to have kalman filters added to filter data)
WCI-1: Change ZMQ version installed by Puppet from v2 to v3
Merge branch 'develop' of github.com:nubots/NUClearPort into develop
Moved the scripts dir
Merge branch 'develop' into feature/ScriptOptimizer

Conflicts:
	modules/NetworkSpeak/src/NetworkSpeak.cpp