testing how branches work
will this remove branchtest.txt?
added dev message to runtime
Make a few commenting changse in the sub-files. I modified femsim.f90 a fair amount because it did not seem to be up to date with the current rmc version. Femsim.f90 is another program that just runs the femsim part of it. RMC runs femsim millions of times. So I am going to work on femsim.f90 first.
I should have pushed a while ago. I am working on getting femsim.f90 and it's needed code cleaned up.

I have created 3 new files with the endings _v2. These new files are stripped down and cleaned up versions of the old ones. Femsim only relies on model, read_inputs, fem1, globals, and scattering_factors. I left the last two alone since there is no reason to change them. The other 3 have the _v2 endings.

Right now the code compiles and runs, but I had to set a variable to 0 because it was segfaulting constantly due to this variable (pp). Search fem1_v2.f90 for DELETE THIS LINE to find the offending line. I need to fix this correctly, instead of just setting it to 0. I also had to add a line to fix a similar problem somewhere else. Search for write(*,*) "     j = ",j. This line should correctly fix the j problem, but I need to make sure.

I still need to (more) thoroughly go through the code. There are some things I want to do. Search for TODO to find most of them.
Hopefully my previous commit will work. I edited a few things while I was thinking about them as I wrote the previous commit message. Now I am commiting those minor changes.
The problem with all the ones I discussed in the last commit (as well as with the A1 array) was that the k array was being overwritten in femsim.f90. I changed this and it now correctly reads in everything (I hope) (not just k). We get reasonable output now! I don't know if it's actually correct though.
Just an overall update. Made some changes make things prettier bascially. Fixed the makefile to not include the link to mpi.mod because we don't want that.
Updated readme to include how to add everyone to the group voylesgroup and set the correct permissions.
I tried to move some files but git didn't like it - trying to revert the changes now - hoping this works.
The last commit on a file that didn't really matter seemed to work, so committing these to revert my moved file changes so I don't screw things up.
Added a couple files to .gitignore
Updated readme.md
These two files are copies of our sge queue and hostlist scripts just for reference for the future.
trying to get some readme formatting correct and also update it with how to set the env vars
readme format update
another readme format update
Updated a bunch in the readme.
format update
I forgot to add something to the readme last time.