fixed issue with printing the dictionary
final trf stats, added unittests
final trf stats, added unittests
added a function to trfStats and FileIO
improved error counts
options
refactor for pier2
merge with blin changes
merge w/ blin, split off hmmparse
improved error message in hmm hit parsing
merge with gcclassif-dev; fixed merge conflicts
Added csv handling for trfStats, added GC for FileIO
fixed trfStats and FileIO for merge with jjzieve
Merge branch 'master' of https://github.com/bylin/nealelab-scripts
Merge branch 'master' into blin