Test commit
Added code to run SGA error correction in assembly pipeline if SGA parameter is set
Added error correction option to pool fastqs
Syntax errors corrected
Increased memory for pool fastqs
Merge branch 'pipeline' of github.com:sanger-pathogens/vr-codebase into add_sga_step_to_pipeline
Syntax errors fixed in pool fastqs perl script
Provide full paths to the fastq files in pool_fastqs
Construct full  paths for the fastq files before sending them for error correction
initial check in of python package installer for python 2.7.3
Added a missing semi colon
Undeclared variables fixed
check of curl returns any data before parsing
reparse whole vep file for each chr
removing bash-specific pythonpath setting
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop
added shell detection to python updater, updated warehouse host
Merge branch 'pipeline' of github.com:sanger-pathogens/vr-codebase into add_sga_step_to_pipeline
adding owner information to pipeline disk usage
Making this available publicly