Changed Maven phase of natives extraction from (default) "package" to
"generate-resources" (this makes more sense as you then have a
functional project when you run the compile goal manually outside m2e)

Note: The automatic extraction of natives in Eclipse (without relying on
on the maven natives eclipse plugin) is covered by the lifecycle
mappings of the maven natives plugin (which are set to
"runOnConfiguration" meaning that natives get extracted on project
import and on configuration update)