Set build version to 0.8.4
Check if required arguments are present
Correctly handle version 0 and 1 .sim number formats; raise error for unknown format code
Merge branch 'master' into devel
Made depth limits of file directory traversal functions optional

Bugfix to use of stat function where returned mtime could be undef
Changed spacing
remove lines from help message not currently applicable to this update_sequenom_metadata tool
add cmd line options for additional (exact) meta data filters (will use AND)
Added new chip design HumanOmniExpressExome-8v1-2
Merge remote branch 'wtsi-npg/devel' into devel
Merge pull request #147 from dkj/devel

Limit update by extra meta data constraints
Merge remote branch 'wtsi-npg/devel' into devel
Added David's filter patch to update_infinium_metadata.pl

Changed use hyphen-separated CLI args

Changed log level of counter from DEBUG to INFO
Removed redundant JSON package import
Added a new type of metadata for RT ticket numbers
Added a find_study_title method

Corrected a typo in SQL which was hotfixed, but not committed
Gave dcterms:identifier' an exported metadata key
$INFINIUM_SAMPLE_NAME

Refactored publish_analysis_directory to use $INFINIUM_SAMPLE_NAME to
cross-reference samples to the analysis (it's primary metadata) and
to be more efficient in iRODS lookups.
Added replacements for publish_sample_data.pl. These split the
file-finding from the publication step.
Changed log4perl setup to log user activity to daily log files
Updated test for known SNP sets