Trestle: only set the resolution count if resolutions are unflattened
Trestle: fix openBytes' behavior when resolutions are unflattened
Trestle: one more fix for unflattened resolutions
Trestle: only parse mask data for non-OME-XML stores
Add missing import
Add a few comments explaining the overlap calculations
merge dev_4_4 -D org -I include -E conflict -E needs-fixes -E broken: PR 379 (Fix source code links moved to the scifio-tools foder)
merge dev_4_4 -D org -I include -E conflict -E needs-fixes -E broken: PR 387 (Metamorph: fix erroneous channel counts)
merge dev_4_4 -D org -I include -E conflict -E needs-fixes -E broken: PR 398 (Trestle fixes)