Fix a bunch of deprecated code.
http://bugs.activestate.com/show_bug.cgi?id=102054

They're all the ko.logging.globalDeprecatedByAlternative things.

(integrated from komodo (trunk) change 83604 by marky)

git-svn-id: http://svn.openkomodo.com/repos/openkomodo/trunk@14168 b87d16e7-d29f-4ee1-b5ec-817d645d335f