Option so that makeCoreClusterAnalysisTree.py writes out lots of tsv files, kept defualt as xls output
add option to save as tsv
add option to save as miltiple tsvfiles
add option to supress Representative Annotations (can be slow)
refactored Representative Annotations
additional user message for file output, check some input
Add command searching function to db_listDbFiles.py
Looks in locateRootDirectory() subdirs: src, scripts, and src/utilities
add not_symmetric_scores selfbit=bitscore/qselfbit and otherbit=bitscore/tselfbit to lib/ClusterFuncs.py
improvements to printing and ordering for db_listDbFiles.py, now searches only executable files
machine-readable output option for db_listDbFiles.py
fixed bug in db_listDbFiles.py when -s or -w with a low number passed w/ a search that returns null
/lib/sanitizeString.py sanitizeByType function for lines, tsv, newick trees, and fasta files
Merge pull request #49 from JamesRH/JamesRHCommits

James rh commits