print a message if the loading of the html help fails.
fixed handling of huisken sequences
rename to WriteSequenceToHdf5 (because there's also WriteSequenceToXml)
rename PlugIns to *PlugIn
remove unused class
add FusionImageLoader to read output of SPIM fusion/deconvolution, add computation of output bounding box
Constructing dataset by combining raw and fused sequences. This is supposed
to become a class with convenience methods for beanshell scripting.
data can now be split into several hdf5 "partition files" with a
"master file" linking everything into place.
Scripting is ok to use from beanshell (we use it to parallelize export on cluster).
Merge branch 'importer'
factor out ViewerImgLoader as an interface (implemented by Hdf5ImageLoader)
such that there can be other backends besides hdf5 eventually.
safety check
Merge branch 'importer'
Added better method to extract approximate rotation from affine transform.
The plane that should be respected by the approximate rotation can be chosen.
refactored IO timing out of Hdf5GlobalCellCache.
(there might be other caches at some point)
removed local jhdf5 repository because it now lives in maven.imagej.net
http://maven.imagej.net/content/repositories/releases/cisd/jhdf5/
added copy() methods for ViewerState and SourceState, and methods to get state from SpimViewer.
set initial transform to show center slice of first timepoint and set brightness
using a histogram of that slice.
remove left-over debug printlns.
work around a java bug with whitespace in filenames.
looks like this: http://bugs.sun.com/view_bug.do?bug_id=5077403
but this should be fixed? maybe it isn't in the jdk fiji uses?