Added CreateCoverageBedFile protocol to in-house pipeline
Merge pull request #45 from ljohansson/master

Changed getstatisticsscriptpath to newest location
Changed mismatches per lane, to max(0 or 1) mismatches per run
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Small bugfix in VcfToTable protocol
Merge pull request #46 from freerkvandijk/master

Added CreateCoverageBedFile protocol
Merge pull request #47 from Gerbenvandervries/master

Changed mismatches per lane, to max(0 or 1) mismatches per run
changed path to getStatisticsScript in parameter file
Merge pull request #48 from Gerbenvandervries/master

Changed path to getStatisticsScript in parameter file
added 2 <noparse> tags in BCLtoFqBcl2FastQ.ftl
Merge pull request #49 from Gerbenvandervries/master

added 2 <noparse> tags in BCLtoFqBcl2FastQ.ftl