Yeah, Ant 1.9.x is fine too

Change-Id: If058e2f839a7d8eb7937da5948d57b18957658eb
Correct addition of atoms to a list. Unlike Vector, a List does not let you use set(int, Obj) unless that index already has an item.

Change-Id: I96004873d392e572efebb94f34f040fb79112238
Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
minimise scope in org.openscience.cdk.hash

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
move seed packages and minimise scope

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
fixup

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
moving equivalent class resolution and restricting visbility

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
move equivalent class resolution classes and minimise scope

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
moving stereo factories

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Moving hash stereo classes to a single package and minimising the scope.

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
More cleanup and minimising visibility of the hash stereo classes.

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
A bit matrix which will help in minimisation when constructing cycle bases

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Utility class for manipulating int[][] adjacency list graphs

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Allow null containers in the ShortestPaths tool

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Removing toAdjList from ShortestPaths and RingSearch the new utility class is now used

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Allowing internal uses to specify an ordering for the ShortestPaths tool

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
A tool to discover the set of initial cycles. This super-set can then be used to extract the minimum cycle basis and relevant cycles

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Extraction of a cycle basis using a greedy algorithm

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Concise algorithm for relevant cycles

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Including new test classes in the module suite

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
Minimum Cycle Basis implementation reusing the set of initial cycles

Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>