added script to select vouchers from sql database
gen_select_vouchers outputs alignments for each gene according to each voucher # so that genes are shared by vouchers
multi-gene configuration for voucher selection updated
Created a pairwise alignment library
Modified to use pairwise alignment
added non-bootstrap kimura distance
updated select vouchers so that it can directly create bootstrap replicates
created a script that merges alignments when they have identical orders
modifications to batch align, select vouchers. added mean bootstrap calculation to species delim.
minor changes to select vouchers
fixed so no divide by zero in k2p distance
added a function that can reduce an alignment down to only those positions in the alignment that are covered by a cetain percentage (e.g. 95% coverage only alignment
alignment coverage reducer is working
re-added shortcut during deletion and re-matching stages. adding major optimizations along those lines as well
added the ability to output a doubled-sided distance matrix at the end of analysis
this is a script to process delimitation output
added flag for print-dist-matrix
added a progress bar for dist matrix
added a random splice function
calculation for 1 to 1 ratio of morpho to OTU correspondence