commit for sanity. Just starting to get a handle on the coring process again!
eesshh
Added the ability to save PCA'd kmersigs
This should make things a little more stable

Added a format version to the file metadat -> welcome to version 1
random commit. Been playing with plotter refine and with many other
plot options. Fixed a bug in ellipsoid which made it bug out when
passed a straight line!
about to split all the refinement code into it's own place.
manual refine works with the new change.
auto refine has been dead for some time now. Gross...
Added timekeeper to most functions and modified timekeeper output
mergeObvious seems to work well now
Added lineWidth, z-order
Added timekeeper to many functions
trivial changes
Stripped out most of the recruit code, all of the refine code.
Added external timekeeper.
Start of the manual
modified transform to accomodate even numbered stoits better
fixed corner labels so that they are not poo
more stoit name fixes
much changes again. Almost almost there..
Stabilized the refine code and exposed more of the debug options to the user
now includes ability to make graphviz-type outputs during core creation
Added new pub figure ability
Added auto detection of cVal cutoff
redid data parsing input. Should make groopm parse MUCH faster