Merge pull request #186 from jaredbischof/master

Updates and improvemets to torque file download from AWE stage
Merge pull request #187 from jaredbischof/master

Re-wrote expanded_sims2overview so that no sorting is required previous ...
Merge pull request #188 from jaredbischof/master

Updates to sims2annotation and updates to expanded_sims2overview that should make this stage parallelizable.
Merge pull request #189 from jaredbischof/master

Added new version of sims2annotation under different name for testing in...
Merge pull request #190 from jaredbischof/master

Fixed formatting issues with source stats summary.  Ready for testing in...
awe_cluster_parallel.pl: if ucluster generates 0-sized file, copy the input sequence file as the output
Merge pull request #191 from wtangiit/master

awe_cluster_parallel.pl: if ucluster generates 0-sized file, copy the in...
Merge pull request #192 from jaredbischof/master

Added checks to make sure prerequisite stages in pipeline actually exist...
Merge pull request #193 from jaredbischof/master

Testing new expanded_sims2overview_no_sort_required script
updated to handle changes in bioportal website and rest service - changes in request url and return structure
Merge pull request #194 from teharrison/master

updated to handle changes in bioportal website and rest service - changes in request url and return structure
fix tech names
Merge pull request #195 from teharrison/master

fix tech names
fix tech names
Merge pull request #196 from teharrison/master

fix tech names
updated to handle different versions of QIIME (1.5 - 1.7)
Merge pull request #197 from teharrison/master

updated to handle different versions of QIIME (1.5 - 1.7)
awe wrapper for qc stage
Merge pull request #198 from wtangiit/master

awe wrapper for qc stage
Merge branch 'master' of github.com:MG-RAST/pipeline