Merge branch 'master' of github.com:nds/assembly_improvement into add_sga_step
Script to rename contigs
Set executable flag for scripts
Merge pull request #16 from andrewjpage/rename_contigs

Rename contigs
handle non word characters in base name
Merge pull request #17 from andrewjpage/rename_contigs

handle non word characters in base name
Merge branch 'master' of github.com:sanger-pathogens/assembly_improvement into subsampling
Merge branch 'add_sga_step' of github.com:nds/assembly_improvement into add_sga_step
rename contigs with fullstop in basename
Merge pull request #18 from andrewjpage/rename_contigs_full_stop

rename contigs with fullstop in basename
Merge branch 'add_sga_step' of github.com:nds/assembly_improvement into add_sga_step
Merge branch 'master' of github.com:sanger-pathogens/assembly_improvement into add_sga_step
Merge branch 'subsampling' of github.com:nds/assembly_improvement into subsampling
Merged with variable_length_fastq branch
Merge branch 'add_sga_step' into subsampling
Merge branch 'subsampling' of github.com:nds/assembly_improvement into subsampling
Merge branch 'subsampling' of github.com:nds/assembly_improvement into subsampling
Merge branch 'subsampling' of github.com:nds/assembly_improvement into subsampling
Merge branch 'subsampling' of github.com:nds/assembly_improvement into subsampling
Merge branch 'subsampling' of github.com:nds/assembly_improvement into subsampling