Update and rename Cell-Mix-Manifest-GenR to Single-Cell-Manifest-GenR

Change to Fluidigm adapters and file path for Single cell Project
Update Single-Cell-Manifest-GenR

Chromosome position cannot be (as.numeric) since ChrXY is non-numeric
Create Single-Cell-Manifest.sh

Takes the output of the file Single-Cell_Manifest-Gen.R which is a csv with format :
s/no, ID, chr, pos, left-primer, right-primer, SNV context, amplicon
and generates a Manifest file for MiSeq (need to manually remove a line before it works).
Create GetRanges.R

This script is Pipeline v2.0 for TNBC it gets ranges to design primers to validate indels and/or SNVs by MiSeq
Change to read sc primer files.xls in directory, remove adaptor seqs, out sc_positions.txt
Add condition where chromosome name already has chr
Merge pull request #1 from MySeq-Tools/master

update more scripts