ome-xml: AbstractOMEModelObject: Deprecate unused overloaded update method and ctors
Merge pull request #591 from rleigh-dundee/omexml-abstractomexmlmodelobject-deprecate-update

ome-xml: AbstractOMEModelObject: Deprecate unused method and ctors
Merge pull request #587 from melissalinkert/rebased/dev_4_4/bfopen-metadata

bfopen: save individual series' original metadata (rebased onto dev_4_4)
merge dev_4_4 -D org -I include -E exclude: PR 579 (CellSens: do not set the resolution count)
merge dev_4_4 -D org -I include -E exclude: PR 584 (Update auto-generated documentation)
merge dev_4_4 -D org -I include -E exclude: PR 586 (CellSens: sort arrays of pixels files)