Add TODO for using a code analysis tool
Add non-critical TODO for a new feature
Add TODO: Fix modification of pre-existing output dir data if the user selects to abort instead of deleting the existing output dir
Resolve TODO of enabling errexit and errtrace. Always good to have those. I haven't resolved the cases where the script will die even though there was no real error but I will run into them anyway when testing the script so we can enable this already.