Formatting fixes

Hey, can you pull in these formatting fixes? Thanks!

Details of fixes:
 - Change all Windows newlines `\r\n` to Unix newlines `\n`
 - Run formatter with my Bukkit Style settings on it

(Note: There are two discrepancies between the formatter settings and the style used by Bukkit, and that is that (1) sometimes Javadocs (`/**`) have an extra space at the end of the line, and (2) Bukkit never does single-line `if` statements without braces (i.e. Bukkit always has braces). I've left these in as-is; you can change them after you merge.)