Cleanups to config_backup_restore, fix missing .jar LOGS for some roms.

Not all roms use the telephony-msim.jar that CM10.2 added.
so to clean error LOGS on each boot, fix this.
Opps My BAD :) restored missing .jar for PHONE APK.
Update system_tune_on_init.sh

Code style fix.
Update sbin/ext/post-init.sh, code style fix.

used http://www.shellcheck.net/
Update /sbin/ext/cortexbrain-tune.sh, fixed code style and errors!
Merged latest CM10.2 (4.3.1) BootBin and ADB binary's
Update install.sh

Code Style fix.
busfreq_up_threshold on wakeboost to 25, user reported SODS with 23.
Fix Install script to resetore STweaks and SuperSU.
Small non critical corrections to kernel apps install.
Tune the freq_step after CPU govs stability restore. profiles will reset!
Fix stuck sbin/ext/post-init.sh on boot!
Reduce check delay for UCI to finish on boot.
Check if screen is OFF then do not push CPU to MAX FREQ. use Safe freq!

if screen is ON again in 3 sec Boot boost speed will be MAX again.

max = what set in stweaks :)
Correction for loop wait for SDcard function.
Cortex: Fixed Wake boost function, and more code style fixes.
CORTEX: first need to INIT the files then load the to varable.

+ on boot the sdio bus is loaded after cortex is loaded.
so clean ERROR on boot that sdio not exist, and give it a chance
to load on next screen off / on
CORTEX: more fixes for WIFI/DATA on/off code + sdio check fix.
CORTEX: More function errors fix. $(foo) mean that it's will be excuted!

so if i need only to load value, i must not use $( ), just =$VARABLE

if i need it to RUN as this -> WHO=$(cat /tmp/who) then it's OK.
Clean /res/ from unused files onboot (files already used when needed)

and now just take kernel module allocated MEM. so by this i will free

3MB of kernel mem, for other needs.