add Bennett Acceptance Ratio (BAR) program

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@118 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
updated BAR program; fixed OpenMP declaration bugs

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@119 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
added bootstrapping to BAR; 1st candidate 6.3 release

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@120 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
improved BAR efficiency by reading parameters once

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@121 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
use unformatted reads to get faster file I/O for BAR

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@122 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
safeguard LS predictor when all uind are zero

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@123 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
added Bennett error estimate to BAR program

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@124 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
Adding in the MPI code (but it's commented out), so it shouldn't break the build process.



git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@125 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
alter setting of restraint force constants to allow zero

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@126 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
patch BAR to handle EOF reads, DIFFUSE to obey ACTIVE keywords

git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@127 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
Fixed compile error with lbuffer_2 variable.


git-svn-id: https://dasher.wustl.edu/subversion/tinker/trunk@128 629c0a7e-b1f9-4fd5-9be9-74e4a2903e08
Initial commit