Module for SPAdes
Modified slightly to be more generic inorder to accept alternative assembler
Changes in cleanup stage to be more generic, instead of using velvet prefix
Changed module name to be spades
Return parameters hash
Removed wrong arrow to $self
Removed wrong arrow to $self
Added missing reference to self
Change directory name from spades to spades_assembly
Corrected the move string in optimise paramters
Do not delete the intermediate spades files
Make spades kmer values all be less than 128
Correct spades python command
Make the output of Spades be called contigs.fa
Merge branch 'add_primer_removal_to_pipeline' into implement_spades
Make kmer values 21-127 and delete all unwanted files produced by SPAdes
Merge pull request #210 from nds/implement_spades

Implement spades assembler into the pipeline