Allow retrieval of FASTA lines with accession only (no space/description after accession)
Formatting fix on PTM Report
Improve submission deletion, less-blocking, error-trapping
Trap error writing to log file for a SUB/SCH/MSS/TSK etc.
Archive submissions in ERROR as well as complete
Merge branch 'utsw' of /srv/git/cpfp into utsw
WIP - Do fragment matching slightly better. Automatically filter out matches by estimating true fragment mass accuracy. Revised ModLS scoring inspired by PhosphoRS variable peak depth. Mass accuracy plots in web interface.
Merge branch 'utsw' of /srv/git/cpfp into utsw
Update spectrum annotation with sequence-ion diagram. Working, but needs a lot of tidying up
Experimental ModLS scoring algorithm using variable peak depth and match filtering
WIP - SVG spectrum plotting work in progress
Modify TPP find_arch.sh so TPP will build when there is no DISTRIB_ID in /etc/lsb-release
Modify cpanfile so modules are all building okay
Merge branch 'utsw' of prcvlx-login-01.swmed.edu:/srv/git/cpfp into utsw
Additional cpan modules for work in progress
Make TPP build work on SL6 from CPFP Makefile.pl. Use -s to silence make, not loads of @lines
Removing git and Tandem sources from CPFP distribution. Will download them during build instead
Remove OMSSA binary from distribution. Makefile.PL will fetch it
Remove .gitignore for tandem binary dir
Remove .gitignore for tpp binary dir