Creating branch ima_implementation for developing IMa implementation.
Updates in included library files.
Updates in included library files.
Updated the Error class message attribute.
Changed the string representation of trees to also have branch lengths.
Added support for running IMa. Made missing plugin raise AnalysisTerminated exception.
Added a bugfix to allow exclude lists to be the same if queries are different. Updated the blast system call. Added some testing code to be removed at a later point.
Updated the crash message.
Added some testing code to be removed later. Updated the error explanation.
Added generic paths joining. Added a path for the IMa results.
Added some error handling for ftp. Added some error handling for dmg disk mounts.
Added --ONEMISSING, --email and --ghostpopulation options. Updated version number.
Initial devel.
Added some ad-hoc results writing for IMa results.
Updated version number.
Added an out-commented version of taxonomy retrieval using Entrez - for later implementation.
Added an __init__ file under PostAnalysis and the Entrez library for retrieving from NCBI.
Merged back changes from trunk.
Commented out excluding self hack
A bunch of stuff. Modified sequence downloads with Entrez. Also added support for Native database.