Added high-impact burden summary and c-alpha test.
Added scipy as a dependency.
new method to map subject name to subject info from PED/sample table
s/--ignore_phasing/--ignore-phasing/
[ENH] new reporting format, new --only-affected option, report family_id
bump to v0.5.1b
enforce variants affecting genes
allow better --filter support in comp_hets
cleanup
remove unnecessary (redundant) LoF and num_het filters from comp_het. Now use --filter for same effect.
rename function
avoid SIGPIPE.  thanks to @m1m0r1
simplify reporting
avoid DB error when using gemini update
avoid SIGPIPE errors throughout
handle sample names that include a .
avoid reporting the same compound het., yet just in the opposite order.
refine prevention of reporting duplicate compund heterozygotes
rollback duplicate removal changes.
Provide more flexible versioning in the setup.py and requirements.txt to allow usage of anaconda pre-built packages during installation