Renamed InteractionUpdate to InteractionEdgeUpdate to avoid a future
conflict.
Made modifyProbabilities return a list of InteractionUpdates, and made
it write to the Interactions and Interactors a new "deleted" annotation.
Avoid NPE when ReportGenerator is null. Also don't perform an update
unless we actually did something.
Made MergeManagers report the updates they made.
Made GraphInteractionAdaptor modifyProbabilities report the changes it
makes.
Fixed a critical bug. Not sure why this wasn't occurring before.
Dramatically improved reporting to display two tables: one of updated
interactions, and another of merged degenerate sets.
Merge branch 'master' of https://github.com/dmyersturnbull/network_merge.git