Merge pull request #201 from SciLifeLab/develop

Develop
Changed the private URL by the public URL of the scilifelab submodule
Merge pull request #204 from guillermo-carrasco/master

Thanks Guillermo!

@vals, @b97pla, @percyfal, if we don't use a public url for the submodule, external people are not allowed to clone our repo cleanly, this should fix that.

If one wants to add further code into scilifelab_bcbio, please just clone that specific repo with read/write access instead.
Adapted to run the testsuite with the python-drmaa module
Adapted to run with automate deployment recipe
Adapted to run with automate deployment recipe
Merge pull request #206 from guillermo-carrasco/master

Adapted to run with automatic deployment recipe
Added drmaa and couchdb as a dependency for the pipeline
Merge pull request #211 from guillermo-carrasco/master

Added drmaa and couchdb as a dependency for the pipeline
Brad patch to skip PDF report generation. Useful for testing
Added default option write_summary: false in order to not generate PDF reports by default
Merge pull request #212 from guillermo-carrasco/testing_patch

Thanks!

Brad patch to skip PDF report generation. Useful for testing.
Merge branch 'develop' of git://github.com/SciLifeLab/bcbb into develop
Added .travis.yml to integrate the deployment with travis-ci.org
Should install pip manually with pip
Added key screen_contaminants: false
Same post-process.yaml than bcbio-nextgen-deploy
Same post-process.yaml than bcbio-nextgen-deploy
Export some environment variables
Merge pull request #213 from guillermo-carrasco/travis_ci

Travis-CI integration for bcbb