Merge pull request #62 from teharrison/master

new script for indexing md5s by integer
Merge pull request #63 from teharrison/master

fix for simseq
Replaced call to index_tab_file to call to index_sims_file_md5.  This should get the correct seek and length values for the analysis database.
Merge pull request #64 from jaredbischof/master

Replaced call to index_tab_file to call to index_sims_file_md5 to fix seek and length values in loading to analysisDB.
Fixed input parameters on call to index_sims_file_md5.
Merge branch 'master' of github.com:MG-RAST/pipeline
Merge pull request #65 from jaredbischof/master

Fixed input parameters on call to index_sims_file_md5.
Removed unnecessary dependency
Fixed database calls.
Merge branch 'master' of github.com:MG-RAST/pipeline
Merge pull request #66 from jaredbischof/master

Fixed database calls.
Merge pull request #67 from wltrimbl/master

Removed biopython dependency from kmercounter driver script that does not use biopython.
add some cmd wrappers for new AWE
Merge pull request #68 from wtangiit/master

add some cmd wrappers for new awe
Merge branch 'master' of github.com:MG-RAST/pipeline
Adding the times that each load to the database starts and stops
Merge pull request #69 from jaredbischof/master

Adding times to loads so we know how long each load takes.
Adding some line returns.
Merge pull request #70 from jaredbischof/master

Adding some line returns.
Want loads to run on local disks even if ppn=4.