Add information on disabled components to the summary pickle.


git-svn-id: https://svn.salilab.org/imp/trunk@16969 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
set intelligent defaults from benchmark


git-svn-id: https://svn.salilab.org/imp/trunk@16970 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
changed ' to "


git-svn-id: https://svn.salilab.org/imp/trunk@16972 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
updated tests


git-svn-id: https://svn.salilab.org/imp/trunk@16973 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
changed --boptimize and --eoptimize to --bmean and --emean

git-svn-id: https://svn.salilab.org/imp/trunk@16975 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
updated tests accordingly


git-svn-id: https://svn.salilab.org/imp/trunk@16976 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
needs slogdet from numpy 1.6.0


git-svn-id: https://svn.salilab.org/imp/trunk@16977 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add function to write out usage message for supporting external argument checking

git-svn-id: https://svn.salilab.org/imp/trunk@16978 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
move imp_rmf_tools to use base flags support

git-svn-id: https://svn.salilab.org/imp/trunk@16979 e91f8c7b-0e32-4433-a9ac-4502d39a4eab