update sqlite to version 3.8.0.1
Merge pull request #81 from stefan-kurtz/sk

Sk
Merge pull request #82 from gordon/sqlite

update sqlite to version 3.8.0.1
add missing include line
union_find: add reset operation

furthermore comment out rank,
which actually is currently unused
paircmp tool: option to output unit edist
macros for addressing a triangular matrix
more work on randomcodes etc
Merge pull request #83 from ggonnella/h-short

pls merge before big changes happen
Added missing assertion in GtSetSourceVisitor constructor
Merge pull request #84 from standage/master

Added missing assertion in GtSetSourceVisitor constructor
use gt_malloc() where possible
Merge pull request #85 from satta/mallocs

use gt_malloc() where possible
get rid of compiler warning (gcc 4.8.1)
Merge pull request #86 from gordon/master

get rid of compiler warning (gcc 4.8.1)
get rid of compiler warning

char doesn't have to be signed
Merge pull request #87 from gordon/master

get rid of compiler warning
move GtUword and GtWord definitions to types_api.h
define GtInt64 and GtUint64
unsigned long long -> GtUint64