Add Christof's tests and begin integration
Merged in some config tests from Christof
Merged in some config tests from Christof
Merge branch 'feature/add_christof_tests' of https://github.com/brettc/partitionfinder into feature/add_christof_tests
add more tests, now reading log output
Merge branch 'feature/add_christof_tests' of https://github.com/brettc/partitionfinder into feature/add_christof_tests

Conflicts:
	tests/cfg/test12.cfg
	tests/cfg/test13.cfg
	tests/cfg/test14.cfg
	tests/cfg/test15.cfg
	tests/cfg/test16.cfg
Merge branch 'feature/add_christof_tests' into develop
Comparison tests are back and working
Simplify paramaterizing test usage
Fix Versioning (now use bump-version.sh)
Use simplest ramxl until problems are resolved
name change for consistency
provisional raxml binaries for win/mac
provisional raxml binaries for win/mac
Merge branch 'release/1.1.0' of https://github.com/brettc/partitionfinder into release/1.1.0
Fix tests for windows

Need to quote command lines. And reduce the precision in the comparisons
updated raxml
updated manual

now we have strict clustering and relaxed clustering approaches
described properly.
Rename folder phyml to phylofiles
Put command line arguments into logfile