Thesis writeup section implementation grammar figure.
Simulating on different input encodings, mixture number M = 1.
PCA implemented for input encoding dimension reduction.

(1) Different grammars, mixtures, and window sizes
	--> tied at mixture level not state level
	--> different mixture numbers (1,3)
	--> window sizes (15,19,31)

(2) PSICOV 
	--> contact map estimation
	--> look for significant local correlation as most people only search
		for non-local correlation for beta-strands
	--> data stored on server at /gluster/data/tmb_maps.tgz