the following functions/files are now all compiled in this script: unzipping_files.r, make.phylo.jimmy.fun.r, reg_calc_and_analysis.r, extinct.calc.r, and maxlik.betasplit.AH.r
modified setup code block specifying libraries to install and code to source
added two more scripts to source: senc_sim_fun.r, and senc_analysis_fun.r which was previously called analysis_workflow_Olympus.r
this is just a renamed version of analysis_workflow_Olympus.r
added make.phylo.jimmy.fun to the .export argument in the foreach loop
renamed from analyzing_sims.r to parallel the function run_sim.r