add sources
remove API document at read()
add a new API: close();
add a new class : CoNLLXSentenceReader, and it's test code.
remove DependencyGraph, and the test code.
remove unused import.
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add tool's shell scripts.
add new classes: OriginalSampleWriter, CoNLLXSampleWriter,
and these test code.
improving code coverage.
remove unused classes
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add a new interface : Common
MIRA enable
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default print stream has been set.
add learning algorithms: MIRA IWPT2003
remove  App.java
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add the test class : GroupIdentifierTest