Version bump to sys-cluster/charm-6.5.0.

This ebuild fixes bugs 471740 and 432834.

Package-Manager: portage-2.2.0_alpha177
Added examples use flag.

Package-Manager: portage-2.2.0_alpha177
More cleanup. Beautify!

Package-Manager: portage-2.2.0_alpha177
The "-DALLOCA_H" compiler flag appears to be unnecessary...

Package-Manager: portage-2.2.0_alpha177
Added src_test().

Package-Manager: portage-2.2.0_alpha177
added cuda toolkit 5.5
sci-libs/monomer-db: Bump EAPI to 5

Package-Manager: portage-2.2.0_alpha177
sci-chemistry/jligand: Version BUmp

Package-Manager: portage-2.2.0_alpha177
RepoMan-Options: --force
sci-chemistry/molrep: Version BUmp

Package-Manager: portage-2.2.0_alpha177
sci-chemistry/xia2: Version BUmp

Package-Manager: portage-2.2.0_alpha177
dev-util/nvidia-cuda-toolkit: Restrict fetch

Package-Manager: portage-2.2.0_alpha177