Merge branch 'release/0.163' into develop
updated metadata in test scripts
File->_check_destination_space becomes public method with new option to return bool instead of throw when lacking space, used by archive_files step to avoid trying to do moves to disc that are guaranteed to fail
turn status_messages on in _prepare_elements_and_states() when versboe
cache path->filelist conversions in _convert_result() to potentially save hours on dataelement creation time
fixed still_in_db test when testing
remove home dir references in recent bwa-mem tests
stringify paths before using them in options
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
in _resolve_inputs, reset iterator on inputs_definition hash so that we correctly fail if one of many input types does not resolve
corrected adaptor_hash definition to avoid transaction failures
changes made as gs data contains sanger id and NOT cgap id
new sql with cgap id as sample id
new sql with cgap id as sample id
Merge branch 'master' of github.com:VertebrateResequencing/vr-pipe into feature/redis_base
redis-related methods (inc. log() and debug()) removed from BackEnd.pm and abstracted away into new InMemory class to make redis methods globally available at more of a base level; no change to actual redis usage other than redis server is now required to be running
Merge branch 'feature/redis_base' into develop
Merge branch 'develop' of /software/vertres/git/origin/vr-pipe into develop
protect against failures storing original_pg_chain to db when string too long and user forgot to turn off store_original_pg_chain option
removed some extraneous lines