Working on gffutils again - adding sanitization and annotation features to cli
Sanitification in progress
Unit testing for sanitization.
Unit testing fails; order of records read by gffutils does not match appearance in file?
Sanitization test
gff writer sketch
gff writer sketch
Minor revs
Random chromosome test
Bug in random chr parsing
resolved
fixed
Merge finally complete? Tests still fail.
Revisions to test attributes modify test
Length for Feature and use of str() method instead of old tostring()
GFFWriter can write gff files in place now or to a filename. Added minimal unit tests.
Tests pass except test_directives, it appears
Revisions to GFFWriter: outputting date in more standard format
frustrations.
Unit test for bug in creation of gff database from iterator