Changed the order of digital inputs

The older DueD board had out of order digital inputs
but the new one has them all in order. So this change
makes the digital inputs match the pinout of the AmpSeal
connector.
Merge pull request #16 from cgalpin/master

Added SerialConsole (Some throttle changes as well)
Fixed code to compile once again

There was an issue with improper case of an included header

Code from cgalpin caused a minor issue in that DMOC code
doesn't have access to runThrottle any longer. I don't
think it's necessary is it? We'll see. Commented out.
Added some notes about what we're doing and what we should be doing.
Fixes to allow use of code without the newest DueD board, read calibration data from EEPROM.
make saved throttle settings immediately available