Removed old sqlite databases.
Refactored login.jsp to use oracle.
Removed gendb.sh it needs to be refactored to use oracle.  In the meantime you can do the following:
Modified deploy.sh to use $CATALINA_BASE instead of $CATALINA_HOME.  You'll still have to export this variable but when you 'starttomcat' the variables will match up.

sqlplus
SQL > @"setup.sql"
SQL > @"users.sql"
[exit]

Then deploy using:
sh deploy.sh