Update pipeline test
Fix duplicated path in environment
Decorate all tools
Remove comment causing json.load to fail
Fix number of input fastq to support jip multiplexing and update setup pipeline outputs
Update run command to use jip
Add jip prepare function
Fix single parameter passing
Update commands
Update tools command
Fix rendere_table import
Add header
Update some tool descriptions
Fix rna pipeline output
Update flux output dir
Update flux tool
Fix long option name